If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ), 'gf_id' => 'HOM05D000916', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000916' ), 'data_identifier' => 'HOM05D000916', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000916', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02340' => 'bna', 'A01p24560' => 'bna', 'A02p02190' => 'bna', 'A02p27690' => 'bna', 'A03p06180' => 'bna', 'A03p66130' => 'bna', 'A04p07570' => 'bna', 'A07p19750' => 'bna', 'A10p19910' => 'bna', 'Aa31LG2G15250' => 'aar', 'Aa31LG6G13330' => 'aar', 'Aa31LG9G12530' => 'aar', 'Aa31LG9G13290' => 'aar', 'Aa31LG9G17030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2289' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.736' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3619' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3663' => 'aag', 'Actinidia06285' => 'ach', 'Actinidia08344' => 'ach', 'Actinidia09044' => 'ach', 'Actinidia20653' => 'ach', 'Actinidia21532' => 'ach', 'Actinidia30433' => 'ach', 'Ah.02g128670' => 'amhyb', 'Ah.03g141020' => 'amhyb', 'Ah.16g100710' => 'amhyb', 'AL6G24420' => 'aly', 'AL6G31370' => 'aly', 'AL7G14540' => 'aly', 'AL7G52050' => 'aly', 'AL8G17370' => 'aly', 'Aqoxy2G00212' => 'aox', 'Aqoxy2G00215' => 'aox', 'Aqoxy2G00552' => 'aox', 'Aqoxy6G00009' => 'aox', 'Aqoxy6G01142' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9H9I7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5W65I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1WGL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G72GGE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HN6Z89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KRYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDBE87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VX3IL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0KZJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU4ZTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4Z44P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y677VA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YN40WG' => 'arhy', 'AT4G36530' => 'ath', 'AT5G13800' => 'ath', 'AT5G19850' => 'ath', 'AT5G38520' => 'ath', 'AT5G43210' => 'ath', 'ATR0320G046' => 'atr', 'ATR0568G009' => 'atr', 'ATR0737G073' => 'atr', 'ATR0782G182' => 'atr', 'ATR1089G163' => 'atr', 'Atru.chr11.2549' => 'acertr', 'Atru.chr11.2553' => 'acertr', 'Atru.chr11.2554' => 'acertr', 'Atru.chr3.2085' => 'acertr', 'Atru.chr3.616' => 'acertr', 'Atru.chr6.10' => 'acertr', 'Atru.chr6.5' => 'acertr', 'AUR62000001' => 'cqu', 'AUR62004075' => 'cqu', 'AUR62007587' => 'cqu', 'AUR62009428' => 'cqu', 'AUR62009433' => 'cqu', 'AUR62017447' => 'cqu', 'AUR62019171' => 'cqu', 'AUR62023107' => 'cqu', 'AUR62023112' => 'cqu', 'AUR62032516' => 'cqu', 'BcaB01g05336' => 'bca', 'BcaB02g08004' => 'bca', 'BcaB07g30592' => 'bca', 'BcaB08g36567' => 'bca', 'BcaC01g00131' => 'bca', 'BcaC01g02997' => 'bca', 'BcaC02g08704' => 'bca', 'BcaC04g19381' => 'bca', 'BcaC04g19382' => 'bca', 'BcaC04g21401' => 'bca', 'BcaC04g21504' => 'bca', 'BcaC08g44384' => 'bca', 'BcaNung00724' => 'bca', 'BcaNung00725' => 'bca', 'BcaNung03392' => 'bca', 'BcaNung04182' => 'bca', 'BolC1t00243H' => 'bol', 'BolC2t06590H' => 'bol', 'BolC3t13220H' => 'bol', 'BolC3t18010H' => 'bol', 'BolC3t19869H' => 'bol', 'BolC6t37027H' => 'bol', 'BolC7t46709H' => 'bol', 'BolC8t48497H' => 'bol', 'BolC9t55962H' => 'bol', 'BolC9t56071H' => 'bol', 'BolC9t56376H' => 'bol', 'BolC9t58500H' => 'bol', 'BraA01t00222Z' => 'bra', 'BraA02t05192Z' => 'bra', 'BraA02t07808Z' => 'bra', 'BraA03t09952Z' => 'bra', 'BraA03t15665Z' => 'bra', 'BraA04t16346Z' => 'bra', 'BraA07t29675Z' => 'bra', 'BraA10t44066Z' => 'bra', 'C01p02550' => 'bna', 'C02p06440' => 'bna', 'C02p27510' => 'bna', 'C02p41330' => 'bna', 'C03p07190' => 'bna', 'C03p57340' => 'bna', 'C04p51520' => 'bna', 'C05p09190' => 'bna', 'C06p18170' => 'bna', 'C07p62980' => 'bna', 'C09p31030' => 'bna', 'C09p35340' => 'bna', 'C09p56310' => 'bna', 'CAN.G1022.4' => 'can', 'CAN.G1276.1' => 'can', 'CAN.G358.60' => 'can', 'CAN.G358.62' => 'can', 'CAN.G410.4' => 'can', 'CAN.G410.9' => 'can', 'CAN.G702.36' => 'can', 'CAN.G767.1' => 'can', 'CANSAT01G0986' => 'cansat', 'CANSAT54G1745' => 'cansat', 'CANSAT80G0128' => 'cansat', 'CANSAT80G0736' => 'cansat', 'CARHR193030' => 'chi', 'CARHR199640' => 'chi', 'CARHR213920' => 'chi', 'CARHR244840' => 'chi', 'Carub.0006s1198' => 'cru', 'Carub.0006s1820' => 'cru', 'Carub.0007s0380' => 'cru', 'Carub.0007s3739' => 'cru', 'Carub.0008s0547' => 'cru', 'Ca_09901_v3' => 'car', 'Ca_13814_v3' => 'car', 'Ca_14192_v3' => 'car', 'Ca_22290_v3' => 'car', 'Ca_28889_v3' => 'car', 'CBR_g23820' => 'cbr', 'CBR_g44394' => 'cbr', 'CBR_g45984' => 'cbr', 'Cc03_g10030' => 'ccan', 'Cc04_g14680' => 'ccan', 'Cc04_g14700' => 'ccan', 'Cc07_g09740' => 'ccan', 'Cc08_g11570' => 'ccan', 'CDE05G3119' => 'cde', 'CDE07G1353' => 'cde', 'CDE08G0464' => 'cde', 'CDE09G0790' => 'cde', 'CDE10G1189' => 'cde', 'CDE11G0804' => 'cde', 'CDE11G1173' => 'cde', 'Cfa009571' => 'cfa', 'Cfa010832' => 'cfa', 'Cfa022925' => 'cfa', 'Ciclev10015550m.g' => 'ccl', 'Ciclev10020543m.g' => 'ccl', 'Ciclev10020551m.g' => 'ccl', 'Ciclev10021411m.g' => 'ccl', 'Ciclev10021413m.g' => 'ccl', 'Ciclev10021643m.g' => 'ccl', 'Ciclev10021704m.g' => 'ccl', 'Ciclev10021706m.g' => 'ccl', 'Ciclev10023397m.g' => 'ccl', 'Ciclev10023871m.g' => 'ccl', 'Ciclev10024042m.g' => 'ccl', 'Ciclev10024073m.g' => 'ccl', 'Ciclev10024267m.g' => 'ccl', 'Ciclev10024539m.g' => 'ccl', 'Ciclev10025882m.g' => 'ccl', 'Ciclev10031731m.g' => 'ccl', 'Ciclev10032919m.g' => 'ccl', 'CiPaw.01G043800' => 'cil', 'CiPaw.03G193200' => 'cil', 'CiPaw.13G008700' => 'cil', 'CiPaw.14G004300' => 'cil', 'CiPaw.14G004400' => 'cil', 'CiPaw.14G135800' => 'cil', 'ClCG02G024330' => 'cla', 'ClCG07G008410' => 'cla', 'ClCG08G002000' => 'cla', 'ClCG09G004480' => 'cla', 'ClCG10G012070' => 'cla', 'COL.COLO4_08311' => 'col', 'COL.COLO4_12325' => 'col', 'COL.COLO4_22049' => 'col', 'COL.COLO4_35043' => 'col', 'Cpa.g.sc119.56' => 'cpa', 'Cpa.g.sc197.25' => 'cpa', 'Cpa.g.sc197.27' => 'cpa', 'Cpa.g.sc21.224' => 'cpa', 'Cpa.g.sc6.139' => 'cpa', 'Cre09.g412700' => 'cre', 'Cre10.g456150' => 'cre', 'Cre12.g514700' => 'cre', 'Cre12.g558550' => 'cre', 'Cre16.g664350' => 'cre', 'CsaV3_3G031830' => 'csa', 'CsaV3_4G005750' => 'csa', 'CsaV3_4G017470' => 'csa', 'CsaV3_6G002450' => 'csa', 'CsaV3_7G030660' => 'csa', 'CSS0001504' => 'camsi', 'CSS0002512' => 'camsi', 'CSS0002864' => 'camsi', 'CSS0008653' => 'camsi', 'CSS0014256' => 'camsi', 'CSS0018332' => 'camsi', 'CSS0018791' => 'camsi', 'CSS0019872' => 'camsi', 'CSS0030270' => 'camsi', 'CSS0031492' => 'camsi', 'CSS0033181' => 'camsi', 'CSS0038393' => 'camsi', 'CSS0040475' => 'camsi', 'CSS0041809' => 'camsi', 'CSS0045227' => 'camsi', 'CSS0046245' => 'camsi', 'DCAR_014544' => 'dca', 'DCAR_016063' => 'dca', 'DCAR_022368' => 'dca', 'DCAR_031814' => 'dca', 'Dinv07420' => 'din', 'Dinv07424' => 'din', 'Dinv09241' => 'din', 'Dinv13456' => 'din', 'Dinv23874' => 'din', 'Dinv28484' => 'din', 'Dinv40000' => 'din', 'Dinv43398' => 'din', 'Duzib052G0187' => 'dzi', 'Duzib133G0052' => 'dzi', 'Duzib133G0774' => 'dzi', 'Duzib138G1830' => 'dzi', 'Duzib147G1027' => 'dzi', 'Duzib168G0456' => 'dzi', 'ECA232G4321' => 'eca', 'ECA248G0906' => 'eca', 'ECA248G2975' => 'eca', 'EL10Ac2g04385' => 'bvu', 'EL10Ac2g04388' => 'bvu', 'EL10Ac4g10376' => 'bvu', 'EL10Ac6g13919' => 'bvu', 'EL10Ac6g15538' => 'bvu', 'EL10Ac8g19622' => 'bvu', 'EL10Ac8g19623' => 'bvu', 'Eucgr.B03607' => 'egr', 'Eucgr.F04110' => 'egr', 'Eucgr.G03276' => 'egr', 'Eucgr.G03277' => 'egr', 'Eucgr.I02423' => 'egr', 'FAN01G1598' => 'fan', 'FAN01G3008' => 'fan', 'FAN03G0804' => 'fan', 'FAN03G1280' => 'fan', 'FAN03G2260' => 'fan', 'FAN03G2955' => 'fan', 'FAN06G1234' => 'fan', 'FAN06G1297' => 'fan', 'FAN11G2367' => 'fan', 'FAN15G2357' => 'fan', 'FAN16G2348' => 'fan', 'FAN19G2623' => 'fan', 'FAN21G1400' => 'fan', 'FAN23G2139' => 'fan', 'FAN25G1294' => 'fan', 'FAN26G0936' => 'fan', 'FAN27G0145' => 'fan', 'FAN27G0203' => 'fan', 'FAN28G1625' => 'fan', 'FvH4_1g13000' => 'fve', 'FvH4_2g37190' => 'fve', 'FvH4_3g45410' => 'fve', 'FvH4_7g01930' => 'fve', 'FvH4_7g01940' => 'fve', 'Glyma.02G055200' => 'gma', 'Glyma.09G226000' => 'gma', 'Glyma.09G226100' => 'gma', 'Glyma.11G157976' => 'gma', 'Glyma.12G010600' => 'gma', 'Glyma.16G138000' => 'gma', 'Glyma.18G000300' => 'gma', 'Glyma.20G214000' => 'gma', 'Gohir.A02G166500' => 'ghi', 'Gohir.A08G055800' => 'ghi', 'Gohir.A08G141100' => 'ghi', 'Gohir.A12G100000' => 'ghi', 'Gohir.A13G063400' => 'ghi', 'Gohir.A13G210000' => 'ghi', 'Gohir.D03G013500' => 'ghi', 'Gohir.D03G119666' => 'ghi', 'Gohir.D08G065100' => 'ghi', 'Gohir.D08G162200' => 'ghi', 'Gohir.D12G102900' => 'ghi', 'Gohir.D13G058800' => 'ghi', 'Gohir.D13G214000' => 'ghi', 'Gohir.D13G216666' => 'ghi', 'Gorai.003G013800' => 'gra', 'Gorai.003G126100' => 'gra', 'Gorai.004G067400' => 'gra', 'Gorai.004G168500' => 'gra', 'Gorai.008G112100' => 'gra', 'Gorai.013G066300' => 'gra', 'Gorai.013G244100' => 'gra', 'Gorai.013G244300' => 'gra', 'Gorai.013G247100' => 'gra', 'GSVIVG01001443001' => 'vvi', 'GSVIVG01001445001' => 'vvi', 'GSVIVG01018934001' => 'vvi', 'GSVIVG01025450001' => 'vvi', 'GSVIVG01037084001' => 'vvi', 'HanXRQChr05g0159011' => 'han', 'HanXRQChr09g0266951' => 'han', 'HanXRQChr11g0325461' => 'han', 'HanXRQChr11g0344701' => 'han', 'HanXRQChr15g0480451' => 'han', 'Haze_03096' => 'cav', 'Haze_03117' => 'cav', 'Haze_03120' => 'cav', 'Haze_03122' => 'cav', 'Haze_11740' => 'cav', 'Haze_13434' => 'cav', 'Haze_22951' => 'cav', 'Hma1.2p1_0269F.1_g107780' => 'hma', 'Hma1.2p1_0278F.1_g111780' => 'hma', 'Hma1.2p1_0278F.1_g111790' => 'hma', 'Hma1.2p1_0579F.1_g182540' => 'hma', 'Hma1.2p1_0589F.1_g184970' => 'hma', 'Hma1.2p1_0789F.1_g218200' => 'hma', 'Hma1.2p1_0843F.1_g227380' => 'hma', 'HPP92_001606' => 'vpl', 'HPP92_003109' => 'vpl', 'HPP92_011273' => 'vpl', 'HPP92_011294' => 'vpl', 'HPP92_022006' => 'vpl', 'Hund02666' => 'sun', 'Hund16440' => 'sun', 'Hund21633' => 'sun', 'Lalb_Chr01g0009441' => 'lal', 'Lalb_Chr02g0149821' => 'lal', 'Lalb_Chr03g0024151' => 'lal', 'Lalb_Chr04g0263761' => 'lal', 'Lalb_Chr16g0391091' => 'lal', 'Lj1A524T16' => 'lonja', 'Lj2A455G46' => 'lonja', 'Lj2g0000465' => 'lja', 'Lj3g0008484' => 'lja', 'Lj3g0014758' => 'lja', 'Lj4g0008677' => 'lja', 'Lj5g0015287' => 'lja', 'Lj7C414G3' => 'lonja', 'Lj9A642T54' => 'lonja', 'Lj9P642T24' => 'lonja', 'Lsat_1_v5_gn_1_100221' => 'lsa', 'Lsat_1_v5_gn_1_67460' => 'lsa', 'Lsat_1_v5_gn_4_131361' => 'lsa', 'Lsat_1_v5_gn_4_152681' => 'lsa', 'Lsat_1_v5_gn_7_34400' => 'lsa', 'Manes.02G095700' => 'mes', 'Manes.06G024300' => 'mes', 'Manes.07G012200' => 'mes', 'Manes.15G108100' => 'mes', 'Manes.16G046800' => 'mes', 'Mapoly0003s0136' => 'mpo', 'Mapoly0005s0281' => 'mpo', 'Mapoly0012s0184' => 'mpo', 'Mapoly0059s0058' => 'mpo', 'MBI01_g18512_MAGBIO' => 'mbi', 'MBI02_g17150_MAGBIO' => 'mbi', 'MBI03_g28954_MAGBIO' => 'mbi', 'MBI04_g09718_MAGBIO' => 'mbi', 'MBI09_g13293_MAGBIO' => 'mbi', 'MBI11_g21817_MAGBIO' => 'mbi', 'MBI13_g36813_MAGBIO' => 'mbi', 'MBI16_g07727_MAGBIO' => 'mbi', 'MCO05G282' => 'mco', 'MCO07G707' => 'mco', 'MCO09G111' => 'mco', 'MCO16G278' => 'mco', 'MD02G1144500' => 'mdo', 'MD02G1299000' => 'mdo', 'MD02G1299100' => 'mdo', 'MD02G1299300' => 'mdo', 'MD07G1025100' => 'mdo', 'MD08G1001000' => 'mdo', 'MD11G1006800' => 'mdo', 'MD11G1007800' => 'mdo', 'MD15G1258200' => 'mdo', 'Medtr0003s0480' => 'mtr', 'Medtr1g076920' => 'mtr', 'Medtr3g034670' => 'mtr', 'Medtr5g056200' => 'mtr', 'Medtr8g077185' => 'mtr', 'MELO3C014720.2' => 'cme', 'MELO3C016375.2' => 'cme', 'MELO3C023590.2' => 'cme', 'MELO3C024009.2' => 'cme', 'MELO3C025041.2' => 'cme', 'Migut.B01255' => 'egut', 'Migut.C01319' => 'egut', 'Migut.G01135' => 'egut', 'Migut.H02536' => 'egut', 'Migut.N01806' => 'egut', 'Migut.N01808' => 'egut', 'MSTRG.17001' => 'ama', 'MSTRG.23239' => 'ama', 'MSTRG.25473' => 'ama', 'MSTRG.4278' => 'ama', 'MSTRG.5047' => 'ama', 'MSTRG.5048' => 'ama', 'Nitab4.5_0000087g0130' => 'nta', 'Nitab4.5_0000178g0250' => 'nta', 'Nitab4.5_0000978g0180' => 'nta', 'Nitab4.5_0002187g0050' => 'nta', 'Nitab4.5_0002275g0030' => 'nta', 'Nitab4.5_0002744g0010' => 'nta', 'Nitab4.5_0002888g0050' => 'nta', 'Nitab4.5_0004758g0020' => 'nta', 'Nitab4.5_0006695g0040' => 'nta', 'Nitab4.5_0006695g0060' => 'nta', 'Nitab4.5_0007490g0070' => 'nta', 'Nitab4.5_0008059g0020' => 'nta', 'Nitab4.5_0009165g0030' => 'nta', 'Nitab4.5_0020250g0020' => 'nta', 'Nn2g14292' => 'nnu', 'Nn2g15162' => 'nnu', 'Nn2g15166' => 'nnu', 'Nn5g27096' => 'nnu', 'Nn7g35884' => 'nnu', 'Nn7g36359' => 'nnu', 'Oeu014600.1' => 'oeu', 'Oeu035135.1' => 'oeu', 'Oeu042247.4' => 'oeu', 'Oeu049471.1' => 'oeu', 'Oeu051786.1' => 'oeu', 'Os02g0705100' => 'osa', 'Os05g0419000' => 'osa', 'Os06g0354700' => 'osa', 'Os07g0575800' => 'osa', 'Os11g0146550' => 'osa', 'Os12g0143300' => 'osa', 'Peaxi162Scf00008g03420' => 'pax', 'Peaxi162Scf00047g00074' => 'pax', 'Peaxi162Scf00071g00942' => 'pax', 'Peaxi162Scf00366g00535' => 'pax', 'Peaxi162Scf00378g00518' => 'pax', 'Peaxi162Scf01108g00012' => 'pax', 'Peaxi162Scf01108g00212' => 'pax', 'PGR031G0424' => 'pgr', 'PGR031G2328' => 'pgr', 'PGR102G2105' => 'pgr', 'PGR119G1696' => 'pgr', 'PGSC0003DMG400006768' => 'stu', 'PGSC0003DMG400006832' => 'stu', 'PGSC0003DMG400015488' => 'stu', 'PGSC0003DMG400021092' => 'stu', 'PGSC0003DMG400023127' => 'stu', 'PGSC0003DMG400037138' => 'stu', 'PGSC0003DMG402004581' => 'stu', 'Phvul.001G269000' => 'pvu', 'Phvul.003G255100' => 'pvu', 'Phvul.005G035700' => 'pvu', 'Phvul.007G113800' => 'pvu', 'Phvul.011G013300' => 'pvu', 'Phvul.011G013400' => 'pvu', 'Potri.001G259216' => 'ptr', 'Potri.001G259900' => 'ptr', 'Potri.001G260300' => 'ptr', 'Potri.001G260600' => 'ptr', 'Potri.003G219700' => 'ptr', 'Potri.005G121000' => 'ptr', 'Potri.009G054800' => 'ptr', 'Potri.019G063900' => 'ptr', 'Pp3c19_19860' => 'ppa', 'Pp3c25_9360' => 'ppa', 'Pp3c3_32100' => 'ppa', 'Pp3c8_3230' => 'ppa', 'Pp3c9_30' => 'ppa', 'PRCOL_00001611' => 'pco', 'PRCOL_00003308' => 'pco', 'PRCOL_00003986' => 'pco', 'PRCOL_00005801' => 'pco', 'Prupe.1G353100' => 'ppe', 'Prupe.2G025000' => 'ppe', 'Prupe.2G025100' => 'ppe', 'Prupe.6G005000' => 'ppe', 'Prupe.6G030800' => 'ppe', 'Prupe.6G143300' => 'ppe', 'Prupe.7G157100' => 'ppe', 'Psat0s488g0040' => 'psa', 'Psat2g088040' => 'psa', 'Psat4g094560' => 'psa', 'Psat5g211600' => 'psa', 'Psat6g112920' => 'psa', 'PSO017G2033' => 'pso', 'PSO170G3269' => 'pso', 'PSO170G4961' => 'pso', 'PSO210G2598' => 'pso', 'PSO339G1413' => 'pso', 'PSO339G1599' => 'pso', 'PSO339G4442' => 'pso', 'PSO384G1579' => 'pso', 'PSO541G5391' => 'pso', 'PSO675G8634' => 'pso', 'QL01p008693' => 'qlo', 'QL04p010554' => 'qlo', 'QL06p046614' => 'qlo', 'QL08p042529' => 'qlo', 'RcHm_v2.0_Chr1g0318631' => 'rch', 'RcHm_v2.0_Chr1g0318641' => 'rch', 'RcHm_v2.0_Chr1g0318661' => 'rch', 'RcHm_v2.0_Chr1g0318771' => 'rch', 'RcHm_v2.0_Chr1g0318891' => 'rch', 'RcHm_v2.0_Chr2g0101081' => 'rch', 'RcHm_v2.0_Chr4g0423241' => 'rch', 'RcHm_v2.0_Chr5g0083221' => 'rch', 'RcHm_v2.0_Chr6g0260581' => 'rch', 'RcHm_v2.0_Chr6g0304501' => 'rch', 'Rhsim01G0124600' => 'rsi', 'Rhsim01G0184600' => 'rsi', 'Rhsim05G0000400' => 'rsi', 'Rhsim07G0060200' => 'rsi', 'Rhsim07G0060800' => 'rsi', 'Rhsim08G0118800' => 'rsi', 'Rhsim08G0118900' => 'rsi', 'Sabra03G0163600' => 'sbr', 'Sabra05G0099700' => 'sbr', 'Sabra09G0040100' => 'sbr', 'Sabra16G0159200' => 'sbr', 'Sabra16G0159300' => 'sbr', 'Sabra19G0077100' => 'sbr', 'Sabra19G0079700' => 'sbr', 'SalBow2G1901' => 'sbo', 'SalBow2G3623' => 'sbo', 'SalBow5G3829' => 'sbo', 'SalBow7G2842' => 'sbo', 'SalBow8G0317' => 'sbo', 'Sc06g0004190' => 'sci', 'Sc06g0004240' => 'sci', 'Sc07g0000810' => 'sci', 'Sc11g0008990' => 'sci', 'Sc11g0009010' => 'sci', 'Sc16g0004220' => 'sci', 'Sed0003044' => 'sed', 'Sed0003753' => 'sed', 'Sed0016593' => 'sed', 'Sed0025824' => 'sed', 'Sed0027440' => 'sed', 'SEGI_01401' => 'sgi', 'SEGI_04744' => 'sgi', 'SEGI_20425' => 'sgi', 'SEGI_28490' => 'sgi', 'SGA_v2.0_scaffold118G32559' => 'sas', 'SGA_v2.0_scaffold119G32770' => 'sas', 'SGA_v2.0_scaffold12G06289' => 'sas', 'SGA_v2.0_scaffold17G08041' => 'sas', 'SGA_v2.0_scaffold5G02941' => 'sas', 'SMO147G0073' => 'smo', 'SMO304G0056' => 'smo', 'SMO348G0040' => 'smo', 'SMO358G0429' => 'smo', 'SMO361G0114' => 'smo', 'SMO361G0121' => 'smo', 'Solyc01g088030.4' => 'sly', 'Solyc01g088090.3' => 'sly', 'Solyc02g062610.3' => 'sly', 'Solyc02g070490.4' => 'sly', 'Solyc02g085070.1' => 'sly', 'Solyc10g049560.3' => 'sly', 'Solyc12g098660.3' => 'sly', 'Sopen01g034920' => 'spe', 'Sopen01g034960' => 'spe', 'Sopen02g013630' => 'spe', 'Sopen02g019580' => 'spe', 'Sopen12g033410' => 'spe', 'Sp2g08020' => 'spa', 'Sp6g24550' => 'spa', 'Sp6g30220' => 'spa', 'Sp7g03540' => 'spa', 'Sp7g34180' => 'spa', 'TAR381G0419' => 'tar', 'TAR629G2069' => 'tar', 'TAR633G0084' => 'tar', 'TAR633G1643' => 'tar', 'TAR636G0367' => 'tar', 'TAR636G0398' => 'tar', 'TAR636G0653' => 'tar', 'TAR636G3509' => 'tar', 'THA.LOC104807463' => 'tha', 'THA.LOC104811067' => 'tha', 'THA.LOC104819108' => 'tha', 'THA.LOC104823867' => 'tha', 'THA.LOC104826696' => 'tha', 'THA.LOC104826705' => 'tha', 'THA.LOC104827431' => 'tha', 'THA.LOC104827432' => 'tha', 'THA.LOC104827433' => 'tha', 'THA.LOC104827434' => 'tha', 'THA.LOC109117201' => 'tha', 'Thecc.01G032600' => 'tca', 'Thecc.01G403500' => 'tca', 'Thecc.02G150300' => 'tca', 'Thecc.09G208000' => 'tca', 'Thhalv10003279m.g' => 'esa', 'Thhalv10013390m.g' => 'esa', 'Thhalv10013775m.g' => 'esa', 'Thhalv10025472m.g' => 'esa', 'Thhalv10027805m.g' => 'esa', 'TPR.G14573' => 'tpr', 'TPR.G16625' => 'tpr', 'TPR.G38291' => 'tpr', 'TPR.G975' => 'tpr', 'TWI09G0352' => 'twi', 'TWI12G0975' => 'twi', 'TWI32G0708' => 'twi', 'TWI53G0499' => 'twi', 'TWI73G1133' => 'twi', 'unitig_0.g2425' => 'ugi', 'unitig_0.g979' => 'ugi', 'unitig_61.g26130' => 'ugi', 'unitig_749.g13874' => 'ugi', 'unitig_899.g14978' => 'ugi', 'vmacro00901' => 'vma', 'vmacro12603' => 'vma', 'vmacro13705' => 'vma', 'vmacro17819' => 'vma', 'vmacro21143' => 'vma', 'vmacro21144' => 'vma', 'VMungo0251G1326' => 'vmu', 'VMungo0720G0569' => 'vmu', 'VMungo1080G0664' => 'vmu', 'VMungo1127G0561' => 'vmu', 'VMungo1127G2227' => 'vmu', 'VMungo1383G0463' => 'vmu', 'Zm00001eb188360' => 'zma', 'Zm00001eb231810' => 'zma', 'Zm00001eb325320' => 'zma', 'Zm00001eb349130' => 'zma', 'Zm00001eb405020' => 'zma' ) $gf_id = 'HOM05D000916' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000916' ) $data_identifier = 'HOM05D000916' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 17, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 14, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 5, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 5, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 11, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb405020' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1